Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086
	protein annotation Proteins - predict, filter, cluster, identify, annotate	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/protein-filter-annotation.workflow.cwl Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
	Feature expression merge - combines feature expression from several experiments Feature expression merge - combines feature expression from several experiments ========================================================================= Workflows merges RPKM (by default) gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns (by default). Reported unique columns are renamed based on the experiments names.	https://github.com/datirium/workflows.git Path: workflows/feature-merge.cwl Branch/Commit ID: a1f6ca50fcb0881781b3ba0306dd61ebf555eaba
	minibam_sub_wf.cwl This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!	https://github.com/david4096/OxoG-Dockstore-Tools.git Path: minibam_sub_wf.cwl Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: c711498c04d6b8ddf92ddceb6219f074765f7993
	SoupX Estimate SoupX Estimate ==============	https://github.com/datirium/workflows.git Path: workflows/soupx.cwl Branch/Commit ID: 22880e0f41d0420a17d643e8a6e8ee18165bbfbf