Explore Workflows
View already parsed workflows here or click here to add your own
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Dockstore.cwl
This is a description |
https://github.com/KTest-Organization/github-apps-workflow.git
Path: Dockstore.cwl Branch/Commit ID: master |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: pcawg_minibam_wf.cwl Branch/Commit ID: develop |
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Simulation Production
Top-level workflow for the production and processing of a new simulated dataset. |
https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git
Path: workflows/uc-dpps-XXXX.cwl Branch/Commit ID: main |
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cmsearch-multimodel.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: 5833078 |
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Unaligned to aligned BAM
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: downsample_and_recall |
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rRNA_selection.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 0cd2d70 |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 135976d |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 5e82174 |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 999afe5b202578ecd8e38bedf3e4788a431e6a58 |
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preference-workflow.cwl
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https://github.com/johnbradley/iMADS-worker.git
Path: predict_service/preference-workflow.cwl Branch/Commit ID: master |
