Explore Workflows
View already parsed workflows here or click here to add your own
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SPRM pipeline
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https://github.com/hubmapconsortium/sprm.git
Path: pipeline.cwl Branch/Commit ID: f9e6ef4 |
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metaphlan_wfl.cwl
# Metaphlan-ISBCGC # Overview This is an example of how to add a description to a workflow. This uses markdown and can show things like images and links. |
https://github.com/dockstore-testing/Metaphlan-ISBCGC.git
Path: metaphlan_wfl.cwl Branch/Commit ID: master |
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run-one.cwl
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https://github.com/hubmapconsortium/hra-workflows.git
Path: steps/run-one.cwl Branch/Commit ID: main |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 43d2fb8 |
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genomics-workspace-genome.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-genome.cwl Branch/Commit ID: master |
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split_bam_subpipeline.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/split_bam_subpipeline.cwl Branch/Commit ID: master |
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wf_full_IDR_pipeline_2inputs_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_2inputs_scatter.cwl Branch/Commit ID: master |
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main-wes_chr21_test.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-arvados/main-wes_chr21_test.cwl Branch/Commit ID: master |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.6 |
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worldpopulation-slurmcern.cwl
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https://github.com/reanahub/reana-demo-worldpopulation.git
Path: workflow/cwl/worldpopulation-slurmcern.cwl Branch/Commit ID: master |
