Explore Workflows
View already parsed workflows here or click here to add your own
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wf-variantcall.cwl
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Path: NA12878-platinum-chr20-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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qiime2 importing data
Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-01-import-data.cwl |
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combine_counts.cwl
Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file. |
Path: 02_combine_counts/combine_counts.cwl Branch/Commit ID: main |
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FragPipe: TMT Integrator and QC
This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets). |
Path: FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl Branch/Commit ID: main |
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oc-workflow.cwl
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Path: oc-workflow.cwl Branch/Commit ID: master |
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rest_parallel.cwl
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Path: Decentralized-FL/CWL_Workflow/rest_parallel.cwl Branch/Commit ID: master |
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Nanopore Quality Control and Filtering
**Workflow for nanopore read quality control and contamination filtering.** - FastQC before filtering (read quality control) - Kraken2 taxonomic read classification - Minimap2 read filtering based on given references - FastQC after filtering (read quality control) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default |
Path: cwl/workflows/workflow_nanopore_quality.cwl Branch/Commit ID: master |
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id_to_json_workflow.cwl
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Path: cwl/id_to_json_workflow.cwl Branch/Commit ID: master |
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rnaseq-star-rsem-pe.cwl
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Path: workflow/rna-seq/rnaseq-star-rsem-pe/rnaseq-star-rsem-pe.cwl Branch/Commit ID: main |
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ST520101.cwl
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Path: ST520101.cwl Branch/Commit ID: main |
