Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf-variantcall.cwl

https://github.com/BD2KGenomics/toil-workflows.git

Path: NA12878-platinum-chr20-workflow/wf-variantcall.cwl

Branch/Commit ID: master
workflow graph qiime2 importing data

Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-01-import-data.cwl
workflow graph combine_counts.cwl

Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file.

https://github.com/ReddyLab/bird-workflow.git

Path: 02_combine_counts/combine_counts.cwl

Branch/Commit ID: main
workflow graph FragPipe: TMT Integrator and QC

This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets).

 https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl

Branch/Commit ID: main
workflow graph oc-workflow.cwl

https://github.com/karchinlab/opencravat-cwl.git

Path: oc-workflow.cwl

Branch/Commit ID: master
workflow graph rest_parallel.cwl

https://github.com/anandanlk/Community-FL.git

Path: Decentralized-FL/CWL_Workflow/rest_parallel.cwl

Branch/Commit ID: master
workflow graph Nanopore Quality Control and Filtering

**Workflow for nanopore read quality control and contamination filtering.** - FastQC before filtering (read quality control) - Kraken2 taxonomic read classification - Minimap2 read filtering based on given references - FastQC after filtering (read quality control) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_nanopore_quality.cwl

Branch/Commit ID: master
workflow graph id_to_json_workflow.cwl

https://github.com/sfu-ireceptor/airr-seqaa.git

Path: cwl/id_to_json_workflow.cwl

Branch/Commit ID: master
workflow graph rnaseq-star-rsem-pe.cwl

https://github.com/pitagora-network/dat2-cwl.git

Path: workflow/rna-seq/rnaseq-star-rsem-pe/rnaseq-star-rsem-pe.cwl

Branch/Commit ID: main
workflow graph ST520101.cwl

https://github.com/Marco-Salvi/dtc51.git

Path: ST520101.cwl

Branch/Commit ID: main