Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	WGS QC workflow nonhuman	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: d57c2af01a3cb6016e5a264f60641eafd2e5aa05
	xbrain.cwl	https://github.com/elenimath/saber.git Path: saber/xbrain/workflows/xbrain.cwl Branch/Commit ID: master
	alignment_novoalign.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/alignment_novoalign.cwl Branch/Commit ID: 13c106834d6c9031de08496faeff521740a0c95f
	PGAP Pipeline, simple user input PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)	https://github.com/ncbi/pgap.git Path: wf_pgap_simple.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c
	fastq_clean_se.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/fastq_clean_se.cwl Branch/Commit ID: 20a901f44c9fb0e6f4ee3c40ec33fa4b1c8ef005
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: d2c2f2eb846ae2e9cdcab46e3bb88e42126cb3f5
	directory.cwl Inspect provided directory and return filenames. Generate a new directory and return it (including content).	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/directory.cwl Branch/Commit ID: fd6e054510e2bb65eed4069a3a88013d7ecbb99c
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: d2c2f2eb846ae2e9cdcab46e3bb88e42126cb3f5
	Genomic regions intersection and visualization Genomic regions intersection and visualization ============================================== 1. Merges intervals within each of the filtered peaks files from ChIP/ATAC experiments 2. Overlaps merged intervals and assigns the nearest genes to them	https://github.com/datirium/workflows.git Path: workflows/intervene.cwl Branch/Commit ID: 2caa50434966ebdf4b33e5ca689c2e4df32f9058
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: ce433f771ebf5677c9f40858e2ae91b1a7e75d30