Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	scatter-valuefrom-wf1.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/scatter-valuefrom-wf1.cwl Branch/Commit ID: 622134ebc48980676b7e53fe39405c428920c03e
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 22ffe27d9d4a899def7592d75d5871c1856adbdb
	get_spike_in_counts.cwl	https://github.com/CompEpigen/ChIPseq_workflows.git Path: CWL/workflow_modules/get_spike_in_counts.cwl Branch/Commit ID: b7709bff6bd6e93a28dfc2fee0655f6aceef0901
	scatter-wf1_v1_0.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/scatter-wf1_v1_0.cwl Branch/Commit ID: 77669d4dd1d1ebd2bdd9810f911608146d9b8e51
	Cut-n-Run pipeline paired-end Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed	https://github.com/datirium/workflows.git Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: cbefc215d8286447620664fb47076ba5d81aa47f
	count-lines10-wf.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/count-lines10-wf.cwl Branch/Commit ID: 5f27e234b4ca88ed1280dedf9e3391a01de12912
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 6949082038c1ad36d6e9848b97a2537aef2d3805
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/datirium/workflows.git Path: subworkflows/heatmap-prepare.cwl Branch/Commit ID: e9a24699d8b5ffe64412b1ba0af8448c281b223a
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 909f26beaf96c2cdfe208f87ecd1e9c3de20b81c
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31