Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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move_and_validate_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/move_and_validate_interleaved_fq.cwl Branch/Commit ID: 0.2.2 |
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Varscan Workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/workflow.cwl Branch/Commit ID: toil_compatibility |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: develop |
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03-map-se.cwl
ChIP-seq 03 mapping - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/03-map-se.cwl Branch/Commit ID: master |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: 0.2.0 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 9c57dba |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: master |
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Detect Variants workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: downsample_and_recall |
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Decompress
Decompress mate pair fastq files |
https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/decompress_mate_pair.workflow.cwl Branch/Commit ID: master |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-04-features.cwl |