Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph preprocess.cwl

https://github.com/Epigenomics-Screw/Screw.git

Path: cwl/preprocess.cwl

Branch/Commit ID: scatter

workflow graph module-2

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-2.cwl

Branch/Commit ID: dev

workflow graph exomeseq.cwl#exomeseq-03-organizedirectories.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: exomeseq-03-organizedirectories.cwl

workflow graph checker-workflow-wrapping-workflow.cwl

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/md5sum-checker.git

Path: checker-workflow-wrapping-workflow.cwl

Branch/Commit ID: develop

workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl

Branch/Commit ID: master

workflow graph TOPMed Alignment - checker

Checker for the TopMed alignment workflow.

https://github.com/stain/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: 4c46a709e7b986a09b9eb27ccdb0540e69e006

workflow graph retrieve metadata from Zenodo community

For a given Zenodo community, retrieve its repository records as Zenodo JSON and (eventually) schema.org JSON-LD and DataCite v4 XML.

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-records.cwl

Branch/Commit ID: master

workflow graph Raw sequence data to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe

workflow graph Hello World

Outputs a message using echo

https://github.com/common-workflow-language/workflows.git

Path: workflows/hello/hello-param.cwl

Branch/Commit ID: master

workflow graph ocrevaluation-performance-test-files-wf-pack.cwl#main

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/ocrevaluation-performance-test-files-wf-pack.cwl

Branch/Commit ID: master

Packed ID: main