Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph biowardrobe_chipseq_se.cwl

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: master

workflow graph indexing_bed

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl

Branch/Commit ID: 1.0.6

workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: c1f8b22

workflow graph fusion_workflow.cwl

Fusion workflow, runs STARFusion and Arriba

https://github.com/BD2KGenomics/dockstore_workflow_fusion.git

Path: fusion_workflow.cwl

Branch/Commit ID: master

workflow graph transform.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/transform.cwl

Branch/Commit ID: 1.1

workflow graph move_and_validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/move_and_validate_interleaved_fq.cwl

Branch/Commit ID: 0.2.2

workflow graph steps.cwl

https://github.com/dimitrapanou/scrnaseq-cwl.git

Path: steps.cwl

Branch/Commit ID: master

workflow graph md5sum-workflow.cwl

https://github.com/dockstore-testing/md5sum-checker.git

Path: md5sum/md5sum-workflow.cwl

Branch/Commit ID: 1.0.1

workflow graph MACE ChIP-exo peak caller workflow for single-end samples

This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE

https://gitlab.com/r78v10a07/cwl-workflow.git

Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl

Branch/Commit ID: master

workflow graph 04-quantification-pe-unstranded.cwl

RNA-seq 04 quantification

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl

Branch/Commit ID: master