Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph alignment_bwa_mem_no_trim.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_no_trim.cwl

Branch/Commit ID: master

workflow graph qiime2 explore sample taxonomic composition

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-08-taxonomic-analysis.cwl

Branch/Commit ID: develop

workflow graph QIIME2 Step 2 (Deblur option)

QIIME2 Deblur, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: main

workflow graph CGP checksum and interleaved fastq generation workflow for a paired fastq

A workflow to generate checksums of FastQ files and a interleaved FastQ from them. See the [workflow-seq-import](https://github.com/cancerit/workflow-seq-import) website for more information.

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_paired_fq.cwl

Branch/Commit ID: 0.3.2

workflow graph Run tRNAScan

https://github.com/ncbi/pgap.git

Path: bacterial_trna/wf_trnascan.cwl

Branch/Commit ID: master

workflow graph tnscope-distr.cwl

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/tnscope-distr.cwl

Branch/Commit ID: master

workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA12878-chr20/NA12878-platinum-chr20-workflow/wf-alignment.cwl

Branch/Commit ID: master

workflow graph pipeline-pe-with-control.cwl

ChIP-seq pipeline - reads: PE, samples: treatment and control.

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/pipeline-pe-with-control.cwl

Branch/Commit ID: master

workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: toil_compatibility

workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 1.0.0