Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 04-peakcall-pe.cwl

ATAC-seq 04 quantification - PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl

Branch/Commit ID: master
workflow graph bwa_pe.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_pe.cwl

Branch/Commit ID: master
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 2104dc3
workflow graph post_assembly.cwl

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: cwl/post_assembly.cwl

Branch/Commit ID: develop
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/genome/cancer-genomics-workflow.git

Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: toil_compatibility
workflow graph ensembl_genomes_to_variation_graph_with_uniprot_annotation_rdf.cwl

https://github.com/vgteam/Veguns.git

Path: ensemblBacteriaUniProtVgExample/ensembl_genomes_to_variation_graph_with_uniprot_annotation_rdf.cwl

Branch/Commit ID: master
workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788
workflow graph create_diploid_genome.cwl

Diploid Genome Creation Workflow

 https://github.com/Sage-Bionetworks/rnaseqSim.git

Path: workflow/create_diploid_genome.cwl

Branch/Commit ID: master
workflow graph main-somatic.cwl

https://github.com/FarahZKhan/bcbio_test_cwl.git

Path: somatic/somatic-workflow/main-somatic.cwl

Branch/Commit ID: master
workflow graph TOPMed Alignment

A CWL wrapper of the TopMed alignment workflow described here: https://github.com/statgen/docker-alignment Tool Author: Hyun Min Kang (hmkang@umich.edu) and Adrian Tan (atks@umich.edu) Wrapper Author: Marko Zecevic (marko.zecevic@sbgenomics.com)

 https://github.com/stain/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl

Branch/Commit ID: no-id