Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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filter_alignment_artifacts.cwl
GATK4.1.2 Alignment artifacts filtration workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/filter_alignment_artifacts.cwl Branch/Commit ID: master |
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abc_step01
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https://github.com/davidroberson/workflow-notebooks.git
Path: abc_enhancer_gene_prediction/abc-enchancer-gene-prediction-wf.cwl.steps/abc_step01.cwl Branch/Commit ID: main |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 1b0851e |
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contaminant_cleanup
This workflow detect and remove contamination from a DNA fasta file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Contamination/fastq-contaminant-cleanup.cwl Branch/Commit ID: master |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/innovation-pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: 16dd8ca |
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workflow.cwl
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https://github.com/uniqueg/RD_pipeline.git
Path: workflow.cwl Branch/Commit ID: master |
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hc-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/hc-distr.cwl Branch/Commit ID: master |
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download-GRCh38.cwl
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https://github.com/hacchy1983/CWL-workflows.git
Path: Workflows/download-GRCh38.cwl Branch/Commit ID: master |
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module-2
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-2.cwl Branch/Commit ID: dev |
