Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 0cd2d70 |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: ef3c7b2 |
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gaps_or_not.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: gaps_or_not.cwl Branch/Commit ID: master |
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exome alignment and germline variant detection
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: low-vaf |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: ca6ca613 |
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workflow_data.cwl
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https://github.com/lukasheinrich/cwltests.git
Path: cwl/workflow_data.cwl Branch/Commit ID: master |
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qc_generator
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https://github.com/msk-access/qc_generation.git
Path: access_qc__packed.cwl Branch/Commit ID: develop Packed ID: qc_generator.cwl |
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count-lines5-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines5-wf.cwl Branch/Commit ID: master |
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pipeline.cwl
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https://github.com/hubmapconsortium/ome-tiff-pyramid.git
Path: pipeline.cwl Branch/Commit ID: a063a34 |
