Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Detect DoCM variants
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Exome QC workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d |
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Varscan Workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 76a35e7d885790f30559beb31f3b58770e343afd |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d |
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kallisto_synapse_paired_end_workflow.cwl
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https://github.com/CRI-iAtlas/iatlas-workflows.git
Path: Kallisto/workflow/kallisto_synapse_paired_end_workflow.cwl Branch/Commit ID: c7fa0fa9ef94c657b664f680462dbc3f5b7a32e8 |
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phase VCF
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5 |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5 |
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FASTQ to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 31602b94b34ff55876147c7299e1bec47e8d1a31 |
