Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 8a8fffb78b1e327ba0da51840ac8acc0c218d611
	xenbase-fastq-bowtie-bigwig-se-pe.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-fastq-bowtie-bigwig-se-pe.cwl Branch/Commit ID: 2d00e7f29c72d33b70dcd46b58db1fc31a7f2d86
	RNA-seq (VCF) alelle specific pipeline for single-read data Allele specific RNA-Seq (using vcf) single-read workflow	https://github.com/datirium/workflows.git Path: workflows/allele-vcf-rnaseq-se.cwl Branch/Commit ID: 4106b7dc96e968db291b7a61ecd1641aa3b3dd6d
	iwdr_with_nested_dirs.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl Branch/Commit ID: 665141f319e6b23bd9924b14844f2e979f141944
	basename-fields-test.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/basename-fields-test.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3
	cache_asnb_entries	https://github.com/ncbi/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65
	scatter-valuefrom-wf4.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl Branch/Commit ID: 4fd5ca5a927594c361a9320d5331b326d06cecd3 Packed ID: main
	allele-alignreads-se-pe.cwl Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted.	https://github.com/datirium/workflows.git Path: subworkflows/allele-alignreads-se-pe.cwl Branch/Commit ID: 4106b7dc96e968db291b7a61ecd1641aa3b3dd6d
	kmer_seq_entry_extract_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 8a8fffb78b1e327ba0da51840ac8acc0c218d611
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 9abcceb95c8dcb74b98d7eeda265d8f3a9a4329e