Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Calibration inputs to Simulation Model
This workflow produces calibration inputs to simulation model: - atmospheric model - extinction hypercube - telescopes' cameras configurations - telescopes' PSFs - optical throughput |
![]() Path: workflows/calibpipe/uc-cp-001.cwl Branch/Commit ID: 76f7c25c0472da23b7e0bfe9f2c18ab6bc369c9d |
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wf_trim_and_map_se_nostats.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
![]() Path: cwl/wf_trim_and_map_se_nostats.cwl Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600 |
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Report generation workflow
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![]() Path: WGS-processing/cwl/helper/report-wf.cwl Branch/Commit ID: 2691061efa8341166ad6518688e5e6c0fb9a8fbf |
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hisat2-cufflinks_wf_se.cwl
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![]() Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl Branch/Commit ID: 4e84905f265e1db212c406d34ae4db2bf565e856 |
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wf_clipseqcore_chimeric_se_1barcode.cwl
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![]() Path: cwl/wf_clipseqcore_chimeric_se_1barcode.cwl Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600 |
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ValidateArrayElementCoordinates
Plot and compare array element coordinates. Validate coordinate transformation from those used in observatory database to simulation systems. |
![]() Path: workflows/ValidateArrayElementCoordinates.cwl Branch/Commit ID: first-example |
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ReceiveAndAssert
Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment? |
![]() Path: workflows/ReceiveAndAssert.cwl Branch/Commit ID: 13a1a949db93afa18ffe8180ff9549e395184e4b |
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ReceiveAndAssert
Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment? |
![]() Path: workflows/ReceiveAndAssert.cwl Branch/Commit ID: cc9902d92de18a6b2bf83dfbc50201cf1b7477b4 |
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DeriveArrayElementCoordinates
Derive array element coordinates and archive data generated in derivation process. |
![]() Path: workflows/DeriveArrayElementCoordinates.cwl Branch/Commit ID: first-example |
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AcceptAndArchive
Accept and archive simulation model parameter(s). Acceptances includes review of validation process. |
![]() Path: workflows/AcceptParameter.cwl Branch/Commit ID: first-example |