Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Calibration inputs to Simulation Model

This workflow produces calibration inputs to simulation model: - atmospheric model - extinction hypercube - telescopes' cameras configurations - telescopes' PSFs - optical throughput

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: workflows/calibpipe/uc-cp-001.cwl

Branch/Commit ID: 76f7c25c0472da23b7e0bfe9f2c18ab6bc369c9d

workflow graph wf_trim_and_map_se_nostats.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_se_nostats.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600

workflow graph Report generation workflow

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/report-wf.cwl

Branch/Commit ID: 2691061efa8341166ad6518688e5e6c0fb9a8fbf

workflow graph hisat2-cufflinks_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl

Branch/Commit ID: 4e84905f265e1db212c406d34ae4db2bf565e856

workflow graph wf_clipseqcore_chimeric_se_1barcode.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_clipseqcore_chimeric_se_1barcode.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600

workflow graph ValidateArrayElementCoordinates

Plot and compare array element coordinates. Validate coordinate transformation from those used in observatory database to simulation systems.

https://github.com/gammasim/workflows.git

Path: workflows/ValidateArrayElementCoordinates.cwl

Branch/Commit ID: first-example

workflow graph ReceiveAndAssert

Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment?

https://github.com/gammasim/workflows.git

Path: workflows/ReceiveAndAssert.cwl

Branch/Commit ID: 13a1a949db93afa18ffe8180ff9549e395184e4b

workflow graph ReceiveAndAssert

Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment?

https://github.com/gammasim/workflows.git

Path: workflows/ReceiveAndAssert.cwl

Branch/Commit ID: cc9902d92de18a6b2bf83dfbc50201cf1b7477b4

workflow graph DeriveArrayElementCoordinates

Derive array element coordinates and archive data generated in derivation process.

https://github.com/gammasim/workflows.git

Path: workflows/DeriveArrayElementCoordinates.cwl

Branch/Commit ID: first-example

workflow graph AcceptAndArchive

Accept and archive simulation model parameter(s). Acceptances includes review of validation process.

https://github.com/gammasim/workflows.git

Path: workflows/AcceptParameter.cwl

Branch/Commit ID: first-example