Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ST520105.cwl
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https://github.com/Marco-Salvi/cwl-ro-crate.git
Path: ST520105.cwl Branch/Commit ID: main |
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QIIME2 Step 1 paired end sequences
QIIME2 Import and Demux Step 1 paired end sequences |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step1-import-demux-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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STAR-RNA-Seq alignment and transcript/gene abundance workflow with Xenosplit
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion_with_xenosplit.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-05-phylogeny.cwl Branch/Commit ID: develop |
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Scattered variant calling workflow
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl Branch/Commit ID: main |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba |
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QIIME2 Step 3
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting |
https://github.com/bespin-workflows/16s-qiime2.git
Path: 16s-step3-alpha-beta-analysis.cwl Branch/Commit ID: develop |
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REGENIE workflow
REGENIE workflow |
https://github.com/manning-lab/regenie-workflow.git
Path: cwl/regenie_workflow.cwl Branch/Commit ID: master |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 9abcceb95c8dcb74b98d7eeda265d8f3a9a4329e |
