Explore Workflows
View already parsed workflows here or click here to add your own
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wf-variantcall.cwl
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Path: somatic/somatic-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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Single-cell RNA-Seq Analyze
Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets. |
Path: workflows/sc-rna-analyze-wf.cwl Branch/Commit ID: main |
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FragPipe: Filter - Quant - Report
This workflow takes the PeptideProphet, and the ProteinProphet output files, and applies a stringent False Discovery Rate (FDR) filtering. Peptide and proteins are filtered individually at 1% FDR. The high-quality PSMs, peptides, and proteins are then quantified using a label-free algorithm that uses the apex peak intensity as a measurement. Finally, the isobaric tags are quantified and annotated with the correct sample labels. |
Path: FragPipe-Filter-Quant-Report/fragpipe-filter-quant-report.cwl Branch/Commit ID: main |
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checker-workflow-wrapping-tool.cwl
This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results |
Path: checker-workflow-wrapping-tool.cwl Branch/Commit ID: develop |
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chunking-subwf-IPS.cwl
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Path: workflows/subworkflows/chunking-subwf-IPS.cwl Branch/Commit ID: master |
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testDirLayout.cwl
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Path: cwl/testDirLayout.cwl Branch/Commit ID: dev |
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waltz_workflow_all_bams.cwl
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Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: 0.0.33_dmp |
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oxog_sub_wf.cwl
This is a subworkflow - this is not meant to be run as a stand-alone workflow! |
Path: oxog_sub_wf.cwl Branch/Commit ID: master |
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cnv_codex
CNV CODEX calling |
Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl Branch/Commit ID: 1.1.3 |
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l1b_workflow.cwl
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Path: cwl/l1b_workflow.cwl Branch/Commit ID: main |
