Explore Workflows
View already parsed workflows here or click here to add your own
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
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wf_exec_paleocar.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/exec_paleocar/wf_exec_paleocar.cwl Branch/Commit ID: master |
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Alignment without BQSR
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl Branch/Commit ID: low-vaf |
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WGS processing workflow for single sample
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl Branch/Commit ID: main |
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SPRM pipeline
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https://github.com/hubmapconsortium/sprm.git
Path: pipeline.cwl Branch/Commit ID: d42d6f5 |
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no-outputs-wf.cwl
Workflow without outputs. |
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/no-outputs-wf.cwl Branch/Commit ID: main |
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snaptools_create_snap_file.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: 5465f66 |
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Unaligned BAM to BQSR and VCF
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: workflow.cwl_2 |
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04-quantification-pe-revstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl Branch/Commit ID: master |
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two-step-workflow.cwl
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https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git
Path: _includes/cwl/two-step-workflow.cwl Branch/Commit ID: gh-pages |
