Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5 |
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Chipseq alignment for mouse with qc and creating homer tag directory
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/chipseq_alignment_mouse.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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umi molecular alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1 |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1 |
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VIRTUS.SE.singlevirus.cwl
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https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/VIRTUS.SE.singlevirus.cwl Branch/Commit ID: 64ba17e5522a7e93256a2a3c5307027dd7625b8e |
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allele-process-strain.cwl
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https://github.com/datirium/workflows.git
Path: subworkflows/allele-process-strain.cwl Branch/Commit ID: 62323c137c0ce9b3f843df0dfbda28dafa7c90cf |
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conflict-wf.cwl#collision
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: 4c905b830371eee45188a53510ba0ee9113fd4c8 Packed ID: collision |
