Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph grepsort workflow

a workflow that performs grep followed by sort

 https://github.com/ResearchObject/runcrate.git

Path: tests/data/grepsort-run-1/snapshot/grepsort.cwl

Branch/Commit ID: 44c831fb97958470d88efc8ecf7ff09bfa2c4e1a
workflow graph stage.cwl

https://github.com/NCI-GDC/vep-cwl.git

Path: v102/workflows/subworkflows/stage.cwl

Branch/Commit ID: e553a62ddb1f8e9feb0f3d4ee2bb02ffeef6ce02
workflow graph align_and_count.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/align_and_count.cwl

Branch/Commit ID: 95fb3e295823bd124b017b6c063d224fbd28457d
workflow graph canine_msisensor_pro_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_msisensor_pro_module.cwl

Branch/Commit ID: 462aaebbd442e84ea101b45b716df0174b88512e
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl

Branch/Commit ID: 3ed10d0ea7ac57550433a89a92bdbe756bdb0e40
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/Barski-lab/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: 2ffe30af333aead4f2a7e181ab151587e825b384
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb
workflow graph secret_wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/secret_wf.cwl

Branch/Commit ID: 6c86caa0571fd186d90a6600e0bb405596d4a5e0
workflow graph sequence (bam or fastqs) to trimmed fastqs

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl

Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d
workflow graph revsort.cwl

https://github.com/ResearchObject/runcrate.git

Path: cwl/revsortlcase/revsort.cwl

Branch/Commit ID: 44c831fb97958470d88efc8ecf7ff09bfa2c4e1a