Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Cell Ranger Build Reference Indices Cell Ranger Build Reference Indices ===================================	https://github.com/datirium/workflows.git Path: workflows/cellranger-mkref.cwl Branch/Commit ID: 00ea05e22788029370898fd4c17798b11edf0e57
	Cell Ranger Aggregate (RNA, RNA+VDJ) Cell Ranger Aggregate (RNA, RNA+VDJ) Combines outputs from multiple runs of either “Cell Ranger Count (RNA)” or “Cell Ranger Count (RNA+VDJ)” pipelines. The results of this workflow are primarily used in “Single-Cell RNA-Seq Filtering Analysis” and “Single-Cell Immune Profiling Analysis” pipelines.	https://github.com/datirium/workflows.git Path: workflows/cellranger-aggr.cwl Branch/Commit ID: 261c0232a7a40880f2480b811ed2d7e89c463869
	basename-fields-test.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/basename-fields-test.cwl Branch/Commit ID: 707ebcd2173889604459c5f4ffb55173c508abb3
	scatter-wf4.cwl#main	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/scatter-wf4.cwl Branch/Commit ID: 31ec48a8d81ef7c1b2c5e9c0a19e7623efe4a1e2 Packed ID: main
	RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5
	contig LCA create LCA consistant across input contigs contigs order of precedence - rRNA, single copy gene, LCA of genes	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/contig-lca.workflow.cwl Branch/Commit ID: 49e29dfc5b1f7a7630831a1052f9136caa29dbf7
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e
	Chipseq alignment with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e
	iwdr_with_nested_dirs.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl Branch/Commit ID: 10492acee927c177933160f6ad67085f9112b0d1