Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Calculate reference coverage
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https://github.com/mr-c/PACT.git
Path: subworkflows/cna_reference_coverage.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
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CNA Pipeline
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https://github.com/mr-c/PACT.git
Path: pipelines/cna_pipeline.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
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Initial CNVkit analysis
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https://github.com/mr-c/PACT.git
Path: subworkflows/cnvkit_initial_analysis.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
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CNA Pipeline
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https://github.com/mr-c/PACT.git
Path: pipelines/cna_pipeline.cwl Branch/Commit ID: afa90537a1d7465aba5fda486d004ced7a805030 |
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Process cnvkit outputs
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https://github.com/mr-c/PACT.git
Path: subworkflows/process_cnvkit_results.cwl Branch/Commit ID: afa90537a1d7465aba5fda486d004ced7a805030 |
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Per-region pindel
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https://github.com/mr-c/PACT.git
Path: subworkflows/pindel_cat.cwl Branch/Commit ID: mr-c-patch-1 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/mr-c/PACT.git
Path: subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: mr-c-patch-1 |
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Apply filters to VCF file
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https://github.com/mr-c/PACT.git
Path: subworkflows/filter_vcf.cwl Branch/Commit ID: mr-c-patch-1 |
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SNV background error suppression using panel of normals
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https://github.com/mr-c/PACT.git
Path: subworkflows/suppress_background_error.cwl Branch/Commit ID: mr-c-patch-1 |
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count-lines14-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines14-wf.cwl Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de |
