Explore Workflows

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: CreateSymlink-workflow.cwl

Branch/Commit ID: 5910b4d88aca172252d9102ddb610a7dc9e1347f

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/timelimit-wf.cwl

Branch/Commit ID: a0f2d38e37ff51721fdeaf993bb2ab474b17246b

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_sort_sa.cwl

Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: eba80916b5cde8bdbd56c077c94240ddf796a27b

Outputs a message using echo

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/hello-workflow.cwl

Branch/Commit ID: 5c7799a145595323d0a8628be1fe0e24985e793a

https://github.com/ncbi/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c

Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_quality.cwl: - FastQC (control) - fastp (trimming) - Diamond read blastx - Refseq - SEED - SAMSA2 processing - HUMAnN read annotation

https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_metagenomics_read_annotation.cwl

Branch/Commit ID: d6893a25b58b9b25fb76c5e060974b54d9eabc41

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: pcawg_annotate_wf.cwl

Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb

bismark genome preparation workflow

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/epigenome-bs-seq/bismark-genome-preparation/bismark-genome-preparation.cwl

Branch/Commit ID: 6db4456ca7314b036e59f50910654066da99772a

https://github.com/mr-c/PACT.git

Path: subworkflows/strelka_and_post_processing.cwl

Branch/Commit ID: mr-c-patch-1