Explore Workflows

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/mutect.cwl

Branch/Commit ID: master

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: low-vaf

https://github.com/mskcc/pluto-cwl.git

Path: cwl/portal-workflow.cwl

Branch/Commit ID: master

Whole Exome Sequence analysis GATK4 Preprocessing

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq-gatk4-preprocessing.cwl

Branch/Commit ID: master

https://github.com/BD2KGenomics/toil-workflows.git

Path: NA12878-platinum-chr20-workflow/wf-alignment.cwl

Branch/Commit ID: master

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-default.cwl

Branch/Commit ID: master

Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert).

https://github.com/gammasim/workflows.git

Path: workflows/SetParameterFromExternal.cwl

Branch/Commit ID: main

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-02-demux-emp-paired.cwl

https://doi.org/10.1007/s12275-011-1213-z

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: f914942

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/mergeAndMarkBams_4_1_3.cwl

Branch/Commit ID: master