Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 5dc7c5c |
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tRNA_selection.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 3168316 |
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blast_extratc_aligned_seq_ids
This workflow screening a Fasta file and extract aligned reads |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Blast/blast-extratc-aligned-seq-ids.cwl Branch/Commit ID: 3247592a89deafaa0d9c5910a1cb1d000ef9b098 |
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snaptools_create_snap_file.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: bb023f9 |
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exome alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: germline_exome_workflow.cwl Branch/Commit ID: toil_compatibility |
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indices-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/indices-header.cwl Branch/Commit ID: master |
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BD Rhapsody™ Targeted Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_targeted_1.8.cwl Branch/Commit ID: master Packed ID: main |
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tRNA_selection.cwl
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 930a2cf |
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count-lines11-null-step-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines11-null-step-wf-noET.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 |
