Explore Workflows

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520113.cwl

Branch/Commit ID: main

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: 1.0.0

https://github.com/genome/cancer-genomics-workflow.git

Path: wgs_alignment.cwl

Branch/Commit ID: toil_compatibility

EPOS-IT Curl Workflow: downloads data based on curl input.

https://github.com/andrejsim/epos-cwl-workflows.git

Path: epos_accept_single_url_curl.cwl

Branch/Commit ID: master

https://github.com/teoloup/nanopore_fusion.git

Path: nanopore_bcr_abl_umi_analysis.cwl

Branch/Commit ID: main

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: QualityFilterOuter.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: dev