Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb |
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bismark-genome-preparation.cwl
bismark genome preparation workflow |
https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/epigenome-bs-seq/bismark-genome-preparation/bismark-genome-preparation.cwl Branch/Commit ID: 6db4456ca7314b036e59f50910654066da99772a |
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strelka workflow
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https://github.com/mr-c/PACT.git
Path: subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: mr-c-patch-1 |
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count-lines9-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines9-wf.cwl Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de |
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wf_full_IDR_pipeline_1input_sample.cwl
This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_1input.cwl |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_1input_sample.cwl Branch/Commit ID: 18933d4d4b00e97a8a0d155abbebad1fdbc254aa |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/datirium/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 8a92669a566589d80fde9d151054ffc220ed4ddd |
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mutect parallel workflow
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https://github.com/mr-c/PACT.git
Path: subworkflows/mutect.cwl Branch/Commit ID: mr-c-patch-1 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
