Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph salmon_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/salmon/paired_end/salmon_wf_pe.cwl

Branch/Commit ID: master
workflow graph hi-c-processing-pairs-nore-nonorm.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nore-nonorm.cwl

Branch/Commit ID: dev2
workflow graph EMG assembly for paired end Illumina

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 2104dc3
workflow graph 04-quantification-pe-stranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl

Branch/Commit ID: master
workflow graph Detect Variants workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/detect_variants_nonhuman.cwl

Branch/Commit ID: master
workflow graph Transcripts annotation workflow

https://github.com/stain/workflow-is-cwl.git

Path: workflows/TranscriptsAnnotation-i5only-wf.cwl

Branch/Commit ID: avoid-spaces
workflow graph retrieve sequence and perform pairwise alignment (sub-workflow process)

\"Perform pairwise alignment of protein sequences for pairs identified by structural similarity search. Step 1: retrieve sequence from blastdbcmd result Step 2: makeblastdb: ../Tools/14_makeblastdb.cwl Step 3: blastdbcmd: ../Tools/15_blastdbcmd.cwl Step 4: seqretsplit: ../Tools/16_seqretsplit.cwl Step 5: needle (Global alignment): ../Tools/17_needle.cwl Step 6: water (Local alignment): ../Tools/17_water.cwl\"

https://github.com/yonesora56/plant2human.git

Path: Workflow/11_retrieve_sequence_wf.cwl

Branch/Commit ID: main
workflow graph Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass2.cwl

Branch/Commit ID: test
workflow graph phase VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: master
workflow graph scatter-wf2.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/scatter-wf2.cwl

Branch/Commit ID: master