Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: No_filters_detect_variants |
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batch-preprocess-ont.cwl
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https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git
Path: PreProcessing/batch-preprocess-ont.cwl Branch/Commit ID: master |
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count-lines17-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines17-wf.cwl Branch/Commit ID: master |
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main-NA12878-platinum-chr20.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/main-NA12878-platinum-chr20.cwl Branch/Commit ID: master |
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umi molecular alignment workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: low-vaf |
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Quality assessment, amplicon classification and functional prediction
Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_ngtax_picrust2.cwl Branch/Commit ID: master |
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scatter-wf1_v1_2.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/scatter-wf1_v1_2.cwl Branch/Commit ID: main |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 1.0.9 |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 6c856cd |
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count-lines18-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines18-wf.cwl Branch/Commit ID: main |
