Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 1c1f5aa0b0dfe5b07beb8ccb0c0e3c073a9fb592
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/datirium/workflows.git Path: subworkflows/heatmap-prepare.cwl Branch/Commit ID: dda9e6e06a656b7b3fa7504156474b962fe3953c
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 4aba7c6591c2f1ebd827a36d325a58738c429bea
	amplicon-1.cwl	https://github.com/EBI-Metagenomics/pipeline-v5.git Path: workflows/conditionals/amplicon/amplicon-1.cwl Branch/Commit ID: 4b98d8bf882bc96d924b5d2d4e6d9c188fa7b273
	screen out taxa Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files)	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 932da3abed7166bd5a962871386ba2c31d47b85c
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 7f9cfcbda5998b164bd1d8f1f6006aefda0f47f3
	Compute library complexity This workflow compute library complexity	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/bedtools-bam-pbc.cwl Branch/Commit ID: 92c23571bd5925c3d33678bc944a8546597cf3a3
	starfishRunner.cwl	https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git Path: steps/starfishRunner.cwl Branch/Commit ID: 5b866e480fb557cf53d619a22068c73548e337d5