Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
wrapper.cwl
|
https://gitlab.com/ellip-ogc-eo-apps/cwl.git
Path: fan-out/stage-in/wrapper.cwl Branch/Commit ID: master |
|
|
|
abra_workflow.cwl
|
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/ABRA/abra_workflow.cwl Branch/Commit ID: master |
|
|
|
regtools workflow
|
https://github.com/griffithlab/regtools-cwl.git
Path: regtools/workflow.cwl Branch/Commit ID: master |
|
|
|
cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl Branch/Commit ID: 1.0.5 |
|
|
|
hisat2-cufflinks_wf_se.cwl
|
https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl Branch/Commit ID: master |
|
|
|
encode_mapping_workflow.cwl
|
https://github.com/encode-dcc/pipeline-container.git
Path: local-workflows/encode_mapping_workflow.cwl Branch/Commit ID: v1.0 |
|
|
|
workflow1_11.cwl#VDJ_Preprocess_Reads.cwl
|
https://github.com/GeorgeAlehandro/cwl_1_11.git
Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: VDJ_Preprocess_Reads.cwl |
|
|
|
prefetch_fastq.cwl
Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd |
https://github.com/common-workflow-library/bio-cwl-tools.git
Path: sratoolkit/prefetch_fastq.cwl Branch/Commit ID: release |
|
|
|
standard_pipeline.cwl
This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2 |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/standard_pipeline.cwl Branch/Commit ID: master |
|
|
|
split-bams-by-strand-and-index.cwl
Split reads in a BAM file by strands and index forward and reverse output BAM files |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/quant/split-bams-by-strand-and-index.cwl Branch/Commit ID: master |
