Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
WGS QC workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8 |
|
|
|
Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8 |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8 |
|
|
|
Subworkflow to allow calling different SV callers which require bam files as inputs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8 |
|
|
|
Exome QC workflow
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
|
|
|
Unaligned bam to sorted, markduped bam
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
|
|
|
Raw sequence data to BQSR
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
|
|
|
Exome QC workflow
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
|
|
|
exome alignment with qc
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
|
|
|
Detect Variants workflow
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
