Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph main-SGDP-recall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: SGDP-recall-CGC/SGDP-recall-cgc/main-SGDP-recall.cwl

Branch/Commit ID: af9a5621efcb44c249697d6df071fe4defe389ac
workflow graph process VCF workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph record-in-secondaryFiles-missing-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/record-in-secondaryFiles-missing-wf.cwl

Branch/Commit ID: a5073143db4155e05df8d2e7eb59d9e62acd65a5
workflow graph rnaseq-alignment-circRNA-multiple-samples

This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-multiple-samples-default.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph WorkflowNo_22

A workflow including the tool(s) Comet, idconvert, mzRecal, Comet, PeptideProphet, ProteinProphet.

 https://github.com/Workflomics/domain-annotations.git

Path: WombatP_tools/workflow_example_prot.cwl

Branch/Commit ID: 00693ced2df1e35a0aba01995bb24538613de9b5
workflow graph kmer_ref_compare_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_ref_compare_wnode.cwl

Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b
workflow graph amplicon-wf--v.5-cond.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/amplicon-wf--v.5-cond.cwl

Branch/Commit ID: a83ee883bb3c7480010fa952939fac771491ddf4
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b