Explore Workflows

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl

Branch/Commit ID: ec2cf2da6c31ffedf827a0fb213b5204e172f510

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: exomeseq-01-preprocessing.cwl

This workflow QC, alignment and quantification from TPMCalculator for not spliced genomes

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RNA-Seq/rnaseq-alignment-quantification_nosplice.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: gatk4-mutect2-tumor-only-cwl/gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl

Branch/Commit ID: 58b62b1bf329b3fbffbd5d9080709999bebc1763

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/cmsearch-condition.cwl

Branch/Commit ID: a83ee883bb3c7480010fa952939fac771491ddf4

sam to fastq workflow

https://github.com/CRI-iAtlas/iatlas-workflows.git

Path: Sam_to_Fastq/workflow/sam_to_fastq_workflow.cwl

Branch/Commit ID: d94151d3aaadee96b52f27e4ce84692c0366fe75

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/amplicon/ITS-wf.cwl

Branch/Commit ID: a83ee883bb3c7480010fa952939fac771491ddf4

Example CWL workflow that uses some advanced features

https://github.com/mskcc/pluto-cwl.git

Path: cwl/example_workflow.cwl

Branch/Commit ID: 59b69eed7ffefcffd81313ec8ffb84c0d716b933

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/marianas/collapsed_fastq_to_bam.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/workflow.cwl

Branch/Commit ID: b62c7bfcf5eb7ac3c1ed06879200fdf5db947e4b