Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph umi duplex alignment workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/duplex_alignment.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph Detect Variants workflow for WGS pipeline

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/detect_variants_wgs.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f
workflow graph wgs alignment with qc

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph Per-region pindel

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985
workflow graph sequence (bam or fastqs) to trimmed fastqs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_trimmed_fastq.cwl

Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
workflow graph bwameth_align_merge_sort_dedup.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/bwameth/tools/bwameth_align_merge_sort_dedup.cwl

Branch/Commit ID: 1416ade270d1b990087e39c6680464c12cf564cc
workflow graph trimmed_fastq

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: b62c7bfcf5eb7ac3c1ed06879200fdf5db947e4b
workflow graph workflow.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_download/workflow.cwl

Branch/Commit ID: 5910b4d88aca172252d9102ddb610a7dc9e1347f
workflow graph cond-wf-001.cwl

https://github.com/rabix/benten.git

Path: tests/cwl/cwl-v1.2/cond-wf-001.cwl

Branch/Commit ID: 543157cc5215615a5623ac12bbbe8bcd8e27d43d