Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph star-stringtie_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/star-stringtie/paired_end/star-stringtie_wf_pe.cwl

Branch/Commit ID: 85c5420fad00cc6ecefb08d3be999e82d4a69bae
workflow graph Runs InterProScan on batches of sequences to retrieve functional annotations.

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/InterProScan-v5-chunked-wf.cwl

Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1
workflow graph extract_capture_kit_http.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_capture_kit_http.cwl

Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd
workflow graph kallisto_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/kallisto/paired_end/kallisto_wf_pe.cwl

Branch/Commit ID: 85c5420fad00cc6ecefb08d3be999e82d4a69bae
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: 68058b108cb5b0b72ebe244c42eefa2747e1d64a
workflow graph gathered exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/gathered_somatic_exome.cwl

Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64
workflow graph chksum_for_a_corrupted_xam_file.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_a_corrupted_xam_file.cwl

Branch/Commit ID: d9598c0b0402ce5282163cd9f44218f907645052
workflow graph cluster_blastp_wnode and gpx_qdump combined

https://github.com/ncbi/pgap.git

Path: task_types/tt_cluster_and_qdump.cwl

Branch/Commit ID: 807fe40bca1fbd18ede6250851b9f71de98da69b
workflow graph process VCF workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: 4b5970dcf08bac2598e62ffd2673e67a25004c40