Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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conditional_bamindex.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/conditional_bamindex.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2 |
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readgroups_bam_to_readgroups_fastq_lists.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
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integrity.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/integrity.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 50d161364e2859ed5c95ef07c9f7234f1431cf31 |
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conditional_markduplicates.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/conditional_markduplicates.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2 |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: b4a6e46405c08e0b14ad92f0ab38bcc4a69caa5c |
