Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	canine_vcfmerger2_module.cwl	https://github.com/d3b-center/canine-dev.git Path: subworkflows/canine_vcfmerger2_module.cwl Branch/Commit ID: 462aaebbd442e84ea101b45b716df0174b88512e
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 6b365b79675b2aabfb8d5829bb8df0a6e986b037
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: cd97086739ae5988bab09b05e9259675c4b6bce6
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20
	trim-rnaseq-pe.cwl Runs RNA-Seq BioWardrobe basic analysis with pair-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/trim-rnaseq-pe.cwl Branch/Commit ID: b8e28a017f7b1a2900ec0fd3b3549f123f0c91b4
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
	pindel parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 641083e9ed933d388f36fa04c00c20a810599e94
	Set Operations for Called Peaks (ChIP/ATAC/C&R/diffbind) # Set Operations for Peaks This workflow takes as input multiple peak list TSV files (the `iaintersect_result.tsv` output under the \"Files\" output tab) from the ChIP, ATAC, C&R, or diffbind workflows and performs the user-selected set operation on the group. Set operations include intersection, union, difference, and complement. See the tooltip for the `set_operator` input for more details.	https://github.com/datirium/workflows.git Path: workflows/filter-peaks-by-overlap.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: 5cb188131f786ed33156e2f0e3dd63ab9c04245d
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 205f4ceb47ba7537a6923d2dfb03668317c2fd89