Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 9e43bc5cff985574e1f8135d4c50b5a347517c9e |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 68058b108cb5b0b72ebe244c42eefa2747e1d64a |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03 |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03 |
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iwdr_with_nested_dirs.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl Branch/Commit ID: 875b928ce50a3202f5954843b79ea86683c160fa |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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wf_demultiplex_se.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_demultiplex_se.cwl Branch/Commit ID: 01c40305cd0adf60b245ba4c59d6607585ae6199 |
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iwdr_with_nested_dirs.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda |
