Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 04-quantification-pe-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl

Branch/Commit ID: master
workflow graph wf_trim_partial_and_map_se_scatter.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_partial_and_map_se_scatter.cwl

Branch/Commit ID: master
workflow graph wf_calculate_models.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/calculate_models/wf_calculate_models.cwl

Branch/Commit ID: master
workflow graph Chipseq alignment for mouse with qc and creating homer tag directory

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/chipseq_alignment_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/validate_interleaved_fq.cwl

Branch/Commit ID: 0.4.0
workflow graph 04-quantification-pe-revstranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-revstranded.cwl

Branch/Commit ID: master
workflow graph snapanalysis_setup_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snapanalysis_setup_and_analyze.cwl

Branch/Commit ID: 302f1f3
workflow graph cnv.cwl

Copynumber variation workflow, runs ADTEx and Varscan

 https://github.com/BD2KGenomics/dockstore_workflow_cnv.git

Path: cnv.cwl

Branch/Commit ID: 1.0.1
workflow graph grep-and-count.cwl

https://github.com/MarkRobbo/workflows.git

Path: workflows/presentation-demo/grep-and-count.cwl

Branch/Commit ID: master
workflow graph bulk scRNA-seq pipeline using Salmon

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: 1af8809