Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: master |
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umi duplex alignment workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: low-vaf |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: master |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: cwlexec |
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wf_gen_paleocar_model3.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/gen_paleocar_models/wf_gen_paleocar_model3.cwl Branch/Commit ID: master |
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5S-from-tablehits.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: master |
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unzipBAMs.cwl
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https://github.com/Kevin-Fang/recall-veritas-pgp.git
Path: unzip/unzipBAMs.cwl Branch/Commit ID: master |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: v1.0.0 |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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Trim and reformat reads (single and paired end version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/trim_and_reformat_reads.cwl Branch/Commit ID: master |
