Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bulk scRNA-seq pipeline using Salmon	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: bulk-pipeline.cwl Branch/Commit ID: main
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: c6bbd4cdd612b3b5cc6e9000df4800c21e192bf5
	Restore contig names Restore the contig names using the map file in ppmeta, virfinder and virsorter output files.	https://github.com/EBI-Metagenomics/emg-viral-pipeline.git Path: cwl/src/Tools/RestoreOutputNames/restore_tools_outputs_swf.cwl Branch/Commit ID: master
	Salmon quantification, FASTQ -> H5AD count matrix	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: steps/salmon-quantification.cwl Branch/Commit ID: f8ea70d
	FASTQ Vector Removal This workflow convert fastq to multiple fasta files	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/fastq-to-splitted-fasta.cwl Branch/Commit ID: master
	wf-variantcall.cwl	https://github.com/bcbio/bcbio_validation_workflows.git Path: somatic-giab-mix/somatic-giab-mix-workflow/wf-variantcall.cwl Branch/Commit ID: master
	EMG pipeline v3.0 (single end version)	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 135976d
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: master
	bismark-genome-preparation.cwl bismark genome preparation workflow	https://github.com/pitagora-network/DAT2-cwl.git Path: workflow/epigenome-bs-seq/bismark-genome-preparation/bismark-genome-preparation.cwl Branch/Commit ID: main
	germline-gpu.cwl	https://github.com/NCGM-genome/WGSpipeline.git Path: Workflows/germline-gpu.cwl Branch/Commit ID: main

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