Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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wf_demultiplex_se.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_demultiplex_se.cwl Branch/Commit ID: 01c40305cd0adf60b245ba4c59d6607585ae6199 |
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iwdr_with_nested_dirs.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/iwdr_with_nested_dirs.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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count-lines12-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: 1f501e38ff692a408e16b246ac7d64d32f0822c2 |
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transform.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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hisat2-cufflinks_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/hisat2-cufflinks/paired_end/hisat2-cufflinks_wf_pe.cwl Branch/Commit ID: e2528f4d7e4ba5664fc171f9a25fc1490ae27c91 |