Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
fastqtosam_se.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_se.cwl Branch/Commit ID: 3ae43ed82a98144cfd50d3b5d65f47ce63cbec7c |
||
transform.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: 4460f32c53529e8c68d078cbef466df6610a32aa |
||
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
||
hisat2-stringtie_wf_pe.cwl
|
https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/hisat2-stringtie/paired_end/hisat2-stringtie_wf_pe.cwl Branch/Commit ID: e2528f4d7e4ba5664fc171f9a25fc1490ae27c91 |
||
extract_capture_kit_http.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_capture_kit_http.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
||
default-wf5.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/default-wf5.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda |
||
screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e |
||
pass-unconnected.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/pass-unconnected.cwl Branch/Commit ID: 1f501e38ff692a408e16b246ac7d64d32f0822c2 |
||
xenbase-rnaseq-se.cwl
XenBase workflow for analysing RNA-Seq single-end data |
https://github.com/datirium/workflows.git
Path: workflows/xenbase-rnaseq-se.cwl Branch/Commit ID: 9a2c389364674221fab3f0f6afdda799e6aa3247 |
||
dynresreq-workflow.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl Branch/Commit ID: cb81b22abc52838823da9945f04d06739ab32fda |