Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Creates a FastJ file for each gVCF by path
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https://github.com/curoverse/l7g.git
Path: cwl-version/convert2fastj/gvcf_version/cwl/tiling_convert2fastj_gvcf.cwl Branch/Commit ID: 720b557e4a822da8c6139a1143e2c8ceaf2102ff |
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echo-wf-default.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/echo-wf-default.cwl Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383 |
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revcomp_with_rename.cwl
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https://github.com/alexbarrera/GGR-cwl.git
Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp_with_rename.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
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scatter-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf1.cwl Branch/Commit ID: f207d168f4e7eb4dd2279840d4062ba75d9c79c3 |
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exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/cle_somatic_exome.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f |
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Hello World
Outputs a message using echo |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/hello-workflow.cwl Branch/Commit ID: 280a852e74aec08cf79687e8004e17b1ab464534 |
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01-qc-se.cwl
ChIP-seq 01 QC - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/01-qc-se.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121 |
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any-type-compat.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/any-type-compat.cwl Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383 |
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Super-enhancer post ChIP-Seq analysis
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
https://github.com/datirium/workflows.git
Path: workflows/super-enhancer.cwl Branch/Commit ID: b141f7e73005227d6d02fa03a47151836dd4109b |
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Per-region pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc |