Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8 |
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count-lines13-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533 |
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revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/revsort.cwl Branch/Commit ID: e59538cd9899a88d7e31e0f259bc56734f604383 |
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Seed Search Compartments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982 |
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functional-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/checker_wf/functional-wf.cwl Branch/Commit ID: 8d8512061f2367c90aac67bcbf92af1061b4af59 |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5 |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775 |
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Create Genomic Collection for Bacterial Pipeline, ASN.1 input
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075 |