Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph checkm_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_checkm_wnode.cwl

Branch/Commit ID: c7c674b873b9925b28ffbd602974eec4bfe78cf9
workflow graph checkm

https://github.com/ncbi/pgap.git

Path: checkm/wf_checkm.cwl

Branch/Commit ID: c7c674b873b9925b28ffbd602974eec4bfe78cf9
workflow graph Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass2.cwl

Branch/Commit ID: c009eeba7379efbbd37b8d5013a83f161f06939b
workflow graph wgs alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_wgs_gvcf.cwl

Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
workflow graph wf.cwl#main

https://github.com/damonge/md_share.git

Path: wf.cwl

Branch/Commit ID: db26ebff3e9a88dd39e9f6a6c23c2b0384f68761

Packed ID: main
workflow graph Whole Exome Sequencing

Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb

Packed ID: main
workflow graph Transcriptome assembly workflow (paired-end version)

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/TranscriptomeAssembly-wf.paired-end.cwl

Branch/Commit ID: 72f702591368397f56d455128f60916902104dd2
workflow graph Water bodies detection based on NDWI and otsu threshold

Water bodies detection based on NDWI and otsu threshold

 https://github.com/fabricebrito/fgb.git

Path: wrapped.cwl

Branch/Commit ID: 08b3e734aadaca3454f3b1225ad3ab76bc10e56a

Packed ID: water_bodies
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: af468ae34c82dc88399aeedfd8f12f1e87052367
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/amplicon/trimming-not-empty-subwf.cwl

Branch/Commit ID: a83ee883bb3c7480010fa952939fac771491ddf4