Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_download/workflow.cwl Branch/Commit ID: 556884e8e205295e561b1d9140d836cdd6c1d8c9
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: c7c674b873b9925b28ffbd602974eec4bfe78cf9
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: c7c674b873b9925b28ffbd602974eec4bfe78cf9
	processing.cwl	https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git Path: steps/processing.cwl Branch/Commit ID: 2e31b8ddd4d509c7bbcb983ad41e401687623ddb
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: c009eeba7379efbbd37b8d5013a83f161f06939b
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: c7c674b873b9925b28ffbd602974eec4bfe78cf9
	blastp_wnode_struct	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: c7c674b873b9925b28ffbd602974eec4bfe78cf9
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
	change_formats_and_names.cwl	https://github.com/kinow/pipeline-v5.git Path: workflows/subworkflows/assembly/change_formats_and_names.cwl Branch/Commit ID: 337033417c49dcf4ab394aba1ec517b97637da13