Explore Workflows
View already parsed workflows here or click here to add your own
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Cell Ranger Aggregate
Cell Ranger Aggregate Aggregates outputs from multiple runs of Cell Ranger Count Gene Expression or Cell Ranger Multi Gene Expression and V(D)J Repertoire Profiling experiments |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-aggr.cwl Branch/Commit ID: 36fd18f11e939d3908b1eca8d2939402f7a99b0f |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Merge, annotate, and generate a TSV for SVs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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umi duplex alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: 44ada20f3eeb59005d5bd999d2435102e9bae991 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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umi duplex alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_umi_duplex.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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ST520102.cwl
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https://github.com/Marco-Salvi/dtc51.git
Path: ST520102.cwl Branch/Commit ID: 272db37d2b8108a146769f0fb0383bb824c9788f |
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ST520109.cwl
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https://github.com/Marco-Salvi/dtc51.git
Path: ST520109.cwl Branch/Commit ID: 272db37d2b8108a146769f0fb0383bb824c9788f |
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ST520105.cwl
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https://github.com/Marco-Salvi/dtc51.git
Path: ST520105.cwl Branch/Commit ID: 272db37d2b8108a146769f0fb0383bb824c9788f |
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ST520111.cwl
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https://github.com/Marco-Salvi/dtc51.git
Path: ST520111.cwl Branch/Commit ID: 272db37d2b8108a146769f0fb0383bb824c9788f |
