Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 31602b94b34ff55876147c7299e1bec47e8d1a31
	Detect Docm variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 0c4f4e59c265eb22aed3d2d37b173cb5430773d2
	count-lines11-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: e8b3565a008d95859fc44227987a54e6a53a8c29
	Cellranger reanalyze - reruns secondary analysis performed on the feature-barcode matrix Devel version of Single-Cell Cell Ranger Reanalyze ================================================== Workflow calls \"cellranger aggr\" command to rerun secondary analysis performed on the feature-barcode matrix (dimensionality reduction, clustering and visualization) using different parameter settings. As an input we use filtered feature-barcode matrices in HDF5 format from cellranger count or aggr experiments. Note, we don't pass aggregation_metadata from the upstream cellranger aggr step. Need to address this issue when needed.	https://github.com/datirium/workflows.git Path: workflows/cellranger-reanalyze.cwl Branch/Commit ID: 5561f7ee11dd74848680351411a19aa87b13d27b
	js-expr-req-wf.cwl#wf	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: fd6e054510e2bb65eed4069a3a88013d7ecbb99c Packed ID: wf
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/ResearchObject/runcrate.git Path: tests/data/revsort-run-1/snapshot/revsort.cwl Branch/Commit ID: 802bd3c43696c88821f75c3ec528573e06679521
	kfdrc_bwamem_subwf.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: workflows/dev/ultra-opt/workflows/kfdrc_bwamem_subwf.cwl Branch/Commit ID: e75f0c96153a484db1f882f6ff2a9764519a3179
	align_and_count_multiple_report.cwl	https://github.com/common-workflow-lab/wdl-cwl-translator.git Path: wdl2cwl/tests/cwl_files/align_and_count_multiple_report.cwl Branch/Commit ID: 54351ba99b1ce06e7eba6f7684f38d3068ee977d
	variant-calling-pair.cwl	https://github.com/mskcc/argos-cwl.git Path: modules/pair/variant-calling-pair.cwl Branch/Commit ID: 9afe0b169cff4df57d5a5cbf18c6e34d5cdc6998
	rnaseq-se-dutp.cwl Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/rnaseq-se-dutp.cwl Branch/Commit ID: a8e4c1245950715d2e07682d3ac4865ce1d73777