Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bam to trimmed fastqs and biscuit alignments

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: downsample_and_recall
workflow graph createindex_singlevirus.cwl

https://github.com/yyoshiaki/virtus.git

Path: workflow/createindex_singlevirus.cwl

Branch/Commit ID: master
workflow graph fastqc_star_samtools.cwl

https://github.com/ALuesink/CWL_test.git

Path: fastqc_star_samtools.cwl

Branch/Commit ID: main
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Exome QC workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_exome.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: downsample_and_recall
workflow graph qiime2 explore sample taxonomic composition

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-08-taxonomic-analysis.cwl
workflow graph test-data.cwl

https://github.com/kyusque/abmp_log_dump2pieda.git

Path: test-data.cwl

Branch/Commit ID: master
workflow graph Spliced RNAseq workflow

Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts)

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_RNAseq_Spliced.cwl

Branch/Commit ID: master
workflow graph cmsearch-multimodel.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 0cf06f1