Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095 |
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post-correct-dir.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/post-correct-dir.cwl Branch/Commit ID: d187a94a601e806e001d31362ba0c9c2534eb426 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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kb-tss-preprocess-all.cwl#kb-tss-preprocess-single-dir.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/kb-tss-preprocess-all.cwl Branch/Commit ID: d187a94a601e806e001d31362ba0c9c2534eb426 Packed ID: kb-tss-preprocess-single-dir.cwl |
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step-valuefrom3-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: 0db44e3c9805a070564f954222efff71cd791b70 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5 |
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screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 7797879b801042984b5ae651754815fc3f77ea41 |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 869b331cfeb9dbd5907498e3eccdebc7c28283e5 |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: ef266744578e2dcbce57c110c6fa3b9eee91e316 |
