Explore Workflows

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-inputs-wf1.cwl

Branch/Commit ID: main

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_protein_alignment.cwl

Branch/Commit ID: test

https://github.com/EOSC-LOFAR/presto-cwl.git

Path: presto_nosort.cwl

Branch/Commit ID: visualise

Validate readout (if applicable for high and low gain chain).

https://github.com/gammasim/workflows.git

Path: workflows/ValidateReadout.cwl

Branch/Commit ID: main

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: bulk-atac-seq-pipeline.cwl

Branch/Commit ID: 3da5dd0

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/main/wf_paleocar_web-app_data_flow_1.cwl

Branch/Commit ID: master

The entire test should take ~24 seconds. Test that the 20 second time limit applies to each step individually (so 1st step has 20 seconds and the 2nd step has 20 seconds). So this 20 second time limit should not cause the workflow to fail. The timing on this test was updated from shorter values to accommodate the startup time of certain container runners, the previous timelimit of 5 seconds was too short, which is why it is now 20 seconds.

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/timelimit2-wf.cwl

Branch/Commit ID: main

Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-09-ancom.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: f993cad

https://github.com/alexbarrera/GGR-cwl.git

Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp.cwl

Branch/Commit ID: master