Explore Workflows
View already parsed workflows here or click here to add your own
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
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no-outputs-wf.cwl
Workflow without outputs. |
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/no-outputs-wf.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: master |
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cond-wf-012.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-012.cwl Branch/Commit ID: main |
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scatter-valuefrom-inputs-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-valuefrom-inputs-wf1.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 56dafa4 |
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workflow.cwl
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https://github.com/fstrozzi/scalability-reproducibility-chapter.git
Path: CWL/workflow.cwl Branch/Commit ID: master |
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exome alignment and tumor-only variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: downsample_and_recall |
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md5sum.cwl
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https://github.com/briandoconnor/dockstore-workflow-md5sum.git
Path: md5sum.cwl Branch/Commit ID: develop |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: downsample_and_recall |
