Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: b12ec8c8e832151033b9e6c0a76a3c3df18d45da |
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count-lines12-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: 03af16c9df2ee77485d4ab092cd64ae096d2e71c |
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SV filtering workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_sv_vcf.cwl Branch/Commit ID: 7f9dfad8e45ca096ae738cff646195b2b1ba7d7f |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: ad65dc1dfff9afa5077f498b85e699716c47f6cb |
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count-lines9-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl Branch/Commit ID: 03af16c9df2ee77485d4ab092cd64ae096d2e71c |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: ddd748516b25256a461ea9277303406fa2759b00 |
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cwlsite.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/site/cwlsite.cwl Branch/Commit ID: 8d8512061f2367c90aac67bcbf92af1061b4af59 |
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Bisulfite alignment and QC
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: 6f9f8a2057c6a9f221a44559f671e87a75c70075 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: bcc6adaf15035f5ce6fc851e27b1173b0fd20c1c |