Explore Workflows

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/call_variants.cwl

Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/platanusB-default.cwl

Branch/Commit ID: e316f37f502005165ebd7f22b5257900c7c712ac

Run hmmscan over an array of files (supports empty or non existent files). Each file will be chunked in 1000 sequences per file to improve the performance. The output will be the concatenation of the output tables.

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/HMMScan/hmmscan_swf.cwl

Branch/Commit ID: aad5474411ea31449b3e8a26eeed8920dd07fa17

https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: b9ec66d82bc04934fbe9f9088ae7e802d72c4a4e

Packed ID: VDJ_tcr.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/conflict.cwl

Branch/Commit ID: 1397d96ad97fe8abfd1184675d728a8a04699d67

Packed ID: main

https://github.com/BAMresearch/NFDI4IngScientificWorkflowRequirements.git

Path: exemplary_workflow/cwl/wf_run_exemplary_wf.cwl

Branch/Commit ID: 870d70ff94bb180abe3b7e0412ec0e893bacc391

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/star2pass.rnaseq_harmonization.cwl

Branch/Commit ID: 88fb720c62a3c2b00ca475d412fba088c4a08f92

Reverse the lines in a document, then sort those lines.

https://github.com/ResearchObject/runcrate.git

Path: tests/data/revsort-run-1/snapshot/revsort.cwl

Branch/Commit ID: 33d769ba3b1086f33351f76f8db4ad841c53a69b

https://github.com/ncbi/pgap.git

Path: task_types/tt_cluster_and_qdump.cwl

Branch/Commit ID: c7c674b873b9925b28ffbd602974eec4bfe78cf9

This workflow detect and remove contamination from a DNA fasta file

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/fastq-contamination-cleanup.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49