Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-fasta.workflow.cwl

Branch/Commit ID: master
workflow graph Exome QC workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl

Branch/Commit ID: downsample_and_recall
workflow graph preprocess.cwl

https://github.com/Epigenomics-Screw/Screw.git

Path: cwl/preprocess.cwl

Branch/Commit ID: master
workflow graph Create target and anti-target files for CNA analysis

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/cnvkit_prep_regions.cwl

Branch/Commit ID: master
workflow graph canine_deepvariant_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_deepvariant_module.cwl

Branch/Commit ID: master
workflow graph GATK-Sub-Workflow-h3abionet-snp.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl

Branch/Commit ID: h3abionet-gatk-workflow
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 72cf42a
workflow graph samtools_sort

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl

Branch/Commit ID: 1.0.6
workflow graph count-lines13-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines13-wf.cwl

Branch/Commit ID: main
workflow graph format-maf

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/portal-formatting.cli/1.0.0/format-maf.cwl

Branch/Commit ID: dev