Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
integrity.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/integrity.cwl Branch/Commit ID: 8edf6a5e4e7790434ad0742e50d0c97a5d0bb846 |
||
03-map-pe.cwl
ChIP-seq 03 mapping - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/03-map-pe.cwl Branch/Commit ID: 3a4314c66c1eb090e656af5a0d388cec87d65318 |
||
sac-preprocess.cwl#align-texts-wf.cwl
|
https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/sac-preprocess.cwl Branch/Commit ID: d187a94a601e806e001d31362ba0c9c2534eb426 Packed ID: align-texts-wf.cwl |
||
functional-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/checker_wf/functional-wf.cwl Branch/Commit ID: 0db44e3c9805a070564f954222efff71cd791b70 |
||
readgroups_bam_to_readgroups_fastq_lists.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroups_bam_to_readgroups_fastq_lists.cwl Branch/Commit ID: 8edf6a5e4e7790434ad0742e50d0c97a5d0bb846 |
||
process VCF workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc |
||
workflow.cwl
|
https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_md5checksums/workflow.cwl Branch/Commit ID: c4c5822441a6a7342e9fdede8e06c56ff865c74c |
||
screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 6c5d0068bdb4f19a36a653c39964aefb9e5a7b1b |
||
Super-enhancer post ChIP-Seq analysis
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
https://github.com/datirium/workflows.git
Path: workflows/super-enhancer.cwl Branch/Commit ID: d6f58c383d0676269afb519399061191a1144a6a |
||
Unaligned to aligned BAM
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9 |