Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Uses Bruker TopSpin to convert a zipped NMR data directory to JCAMP-DX

https://github.com/NFDI4Chem/formaTAPIRest.git

Path: cwl/zipped2bruker2jcamp.cwl

Branch/Commit ID: da8a0496d4fbe1815dc978a5ceaa183b7cb73cf1
workflow graph rnaseq-alignment-quantification

This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RNA-Seq/rnaseq-quantification-qc.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph call_variants.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/call_variants.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf
workflow graph vcf.gz2bed.cwl

https://github.com/biosciencedbc/jga-analysis.git

Path: multi-samples/Workflows/vcf.gz2bed.cwl

Branch/Commit ID: main
workflow graph no-inputs-wf.cwl

Workflow without inputs.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/no-inputs-wf.cwl

Branch/Commit ID: b1d4a69df86350059bd49aa127c02be0c349f7de
workflow graph vqsr.cwl

https://github.com/biosciencedbc/jga-analysis.git

Path: multi-samples/Workflows/vqsr.cwl

Branch/Commit ID: main
workflow graph vcf_concat.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/vcf_concat.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf
workflow graph BD Rhapsody™ WTA Analysis Pipeline

The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

 https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: 46d4472af75afacfb13ed92d149a4decd015cf43

Packed ID: main
workflow graph two-step-workflow.cwl

https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git

Path: _includes/cwl/two-step-workflow.cwl

Branch/Commit ID: 4b43712319e2009c3867446b5dd1e8e31e897458
workflow graph dfast-filelist.cwl

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/dfast-filelist.cwl

Branch/Commit ID: e316f37f502005165ebd7f22b5257900c7c712ac