Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: ef266744578e2dcbce57c110c6fa3b9eee91e316 |
|
|
|
adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533 |
|
|
|
count-lines3-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl Branch/Commit ID: 03af16c9df2ee77485d4ab092cd64ae096d2e71c |
|
|
|
Generate genome index bowtie
Workflow makes indices for [bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016). Executes `bowtie-index` to generate indices requires genome [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) file as input, returns results as a directory |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: dda9e6e06a656b7b3fa7504156474b962fe3953c |
|
|
|
gp_makeblastdb
|
https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942 |
|
|
|
spurious_annot
|
https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942 |
|
|
|
echo-wf-default.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/echo-wf-default.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9 |
|
|
|
mutect parallel workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379 |
|
|
|
trnascan_wnode and gpx_qdump combined
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65 |
|
|
|
pindel parallel workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379 |
