Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph idr.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/idr.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph qc_workflow_wo_waltz.cwl

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a
workflow graph umi per-lane alignment subworkflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: 9c0b1497c467393e1a54735575043dced73e95c4
workflow graph rsem_from_sra_wf.cwl

https://github.com/inutano/sra-star-rsem.git

Path: analysis/processing/readcount/cwl/rsem_from_sra_wf.cwl

Branch/Commit ID: 0b600d721bffabc4eac4124481e078bdc68cfa56
workflow graph contamination_foreign_chromosome

This workflow detect and remove foreign chromosome from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/contamination-foreign-chromosome-blastn.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph kmer_ref_compare_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_ref_compare_wnode.cwl

Branch/Commit ID: c009eeba7379efbbd37b8d5013a83f161f06939b
workflow graph BioExcel-CWL-firstWorkflow.cwl

https://github.com/bioexcel/biobb_wf_cwl_tutorial.git

Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-firstWorkflow.cwl

Branch/Commit ID: ede6801ecf5ab5f680a429722ec3aa450f96a6e9
workflow graph workflow.cwl

https://github.com/Andreja28/cloud-workflows.git

Path: cwl/ArtreatPakAthero/workflow.cwl

Branch/Commit ID: ed5dd0589aa951193f4b98f44b0edc7f58e04ba5
workflow graph MACE ChIP-exo peak caller workflow for single-end samples

This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE

 https://gitlab.com/r78v10a07/cwl-workflow.git

Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl

Branch/Commit ID: 5964544849c8def80fb47813e34ce185205fda94
workflow graph starfishRunner.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/starfishRunner.cwl

Branch/Commit ID: 2e31b8ddd4d509c7bbcb983ad41e401687623ddb