Explore Workflows

https://github.com/InsightSoftwareConsortium/GetYourBrainStraight.git

Path: HCK01_2022_Virtual/Tutorials/GetYourBrainPipelined/CWL-Demo/examplePipeline.cwl

Branch/Commit ID: 9d1a1e6f9d8fe99a22526069d3291ec7cca915e7

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/io-int-default-tool-and-wf.cwl

Branch/Commit ID: a5073143db4155e05df8d2e7eb59d9e62acd65a5

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/genotypegvcfs.cwl

Branch/Commit ID: 13c106834d6c9031de08496faeff521740a0c95f

a workflow that performs grep followed by sort

https://github.com/ResearchObject/runcrate.git

Path: tests/data/grepsort-run-1/snapshot/grepsort.cwl

Branch/Commit ID: 44c831fb97958470d88efc8ecf7ff09bfa2c4e1a

https://github.com/NCI-GDC/vep-cwl.git

Path: v102/workflows/subworkflows/stage.cwl

Branch/Commit ID: e553a62ddb1f8e9feb0f3d4ee2bb02ffeef6ce02

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/align_and_count.cwl

Branch/Commit ID: 95fb3e295823bd124b017b6c063d224fbd28457d

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_msisensor_pro_module.cwl

Branch/Commit ID: 462aaebbd442e84ea101b45b716df0174b88512e

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl

Branch/Commit ID: 3ed10d0ea7ac57550433a89a92bdbe756bdb0e40

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/Barski-lab/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: 2ffe30af333aead4f2a7e181ab151587e825b384

Some workflow engines won't stage files in our nested structure, so parse it out here

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb